Accueil du site > Équipes > Interactions hôte-pathogène (S Ricard-Blum) > Publications
Publications
75. Hemoglobin allostery: new views on old players.
Miele AE, Bellelli A, Brunori M
(2013) J Mol Biol 425 : 1515-26
74. BioJS: an open source JavaScript framework for biological data visualization.
Gomez J, Garcia LJ, Salazar GA, Villaveces J, Gore S, Garcia A, Martin MJ, Launay G, Alcantara R, Del-Toro N, Dumousseau M, Orchard S, Velankar S, Hermjakob H, Zong C, Ping P, Corpas M, Jimenez RC
(2013) Bioinformatics 29 : 1103-1104
73. Mapping of heparin/heparan sulfate binding sites on ?v?3 integrin by molecular docking.
Ballut L, Sapay N, Chautard E, Imberty A, Ricard-Blum S
(2013) J Mol Recognit 26 : 76-85
2012 [Top] 11
72. Target-derived matricryptins organize cerebellar synapse formation through ?3?1 integrins.
Su J, Stenbjorn RS, Gorse K, Su K, Hauser KF, Ricard-Blum S, Pihlajaniemi T, Fox MA
(2012) Cell Rep 2 : 223-30
71. Moonlighting by different stressors: crystal structure of the chaperone species of a 2-Cys peroxiredoxin.
Saccoccia F, Di Micco P, Boumis G, Brunori M, Koutris I, Miele AE, Morea V, Sriratana P, Williams DL, Bellelli A, Angelucci F
(2012) Structure 20 : 429-39
70. Crystal structure of Plasmodium falciparum thioredoxin reductase, a validated drug target.
Boumis G, Giardina G, Angelucci F, Bellelli A, Brunori M, Dimastrogiovanni D, Saccoccia F, Miele AE
(2012) Biochem Biophys Res Commun 425 : 806-11
69. Automatic modeling of mammalian olfactory receptors and docking of odorants.
Launay G, Teletchea S, Wade F, Pajot-Augy E, Gibrat JF, Sanz G
(2012) Protein Eng Des Sel 25 : 377-86
68. Toward a systems level view of the ECM and related proteins: a framework for the systematic definition and analysis of biological systems.
Cromar GL, Xiong X, Chautard E, Ricard-Blum S, Parkinson J
(2012) Proteins 80 : 1522-44
67. On the mechanism and rate of gold incorporation into thiol-dependent flavoreductases.
Saccoccia F, Angelucci F, Boumis G, Brunori M, Miele AE, Williams DL, Bellelli A
(2012) J Inorg Biochem 108 : 105-11
66. Stp1 and Stk1: the Yin and Yang of vancomycin sensitivity and virulence in vancomycin-intermediate Staphylococcus aureus strains.
Cheung A, Duclos B
(2012) J Infect Dis 205 : 1625-7
65. In vivo evidence for a bridging role of a collagen V subtype at the epidermis-dermis interface.
Bonod-Bidaud C, Roulet M, Hansen U, Elsheikh A, Malbouyres M, Ricard-Blum S, Faye C, Vaganay E, Rousselle P, Ruggiero F
(2012) J Invest Dermatol 132 : 1841-9
64. Statistical significance of threading scores.
Movaghar AF, Launay G, Schbath S, Gibrat JF, Rodolphe F
(2012) J Comput Biol 19 : 13-29
63. Protein interaction data curation: the International Molecular Exchange (IMEx) consortium.
Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, Bidwell S, Bridge A, Briganti L, Brinkman FS, Brinkman F, Cesareni G, Chatr-aryamontri A, Chautard E, Chen C, Dumousseau M, Goll J, Hancock RE, Hancock R, Hannick LI, Jurisica I, Khadake J, Lynn DJ, Mahadevan U, Perfetto L, Raghunath A, Ricard-Blum S, Roechert B, Salwinski L, Stumpflen V, Tyers M, Uetz P, Xenarios I, Hermjakob H
(2012) Nat Methods 9 : 345-50
62. Tetrastatin, the NC1 domain of the ?4(IV) collagen chain: a novel potent anti-tumor matrikine.
Brassart-Pasco S, Senechal K, Thevenard J, Ramont L, Devy J, Di Stefano L, Dupont-Deshorgue A, Brezillon S, Feru J, Jazeron JF, Diebold MD, Ricard-Blum S, Maquart FX, Monboisse JC
(2012) PLoS One 7 : e29587-e29587
2011 [Top] 11
61. Identification of binding partners interacting with the ?1-N-propeptide of type V collagen.
Symoens S, Renard M, Bonod-Bidaud C, Syx D, Vaganay E, Malfait F, Ricard-Blum S, Kessler E, Van Laer L, Coucke P, Ruggiero F, De Paepe A
(2011) Biochem J 433 : 371-81
60. Matricryptins derived from collagens and proteoglycans.
Ricard-Blum S, Ballut L
(2011) Front Biosci 16 : 674-97
59. The collagen family.
Ricard-Blum S
(2011) Cold Spring Harb Perspect Biol 3 : a004978-a004978
58. Intrinsic disorder of the extracellular matrix.
Peysselon F, Xue B, Uversky VN, Ricard-Blum S
(2011) Mol Biosyst 7 : 3353-65
57. PSICQUIC and PSISCORE: accessing and scoring molecular interactions.
Aranda B, Blankenburg H, Kerrien S, Brinkman FS, Ceol A, Chautard E, Dana JM, De Las Rivas J, Dumousseau M, Galeota E, Gaulton A, Goll J, Hancock RE, Isserlin R, Jimenez RC, Kerssemakers J, Khadake J, Lynn DJ, Michaut M, O'Kelly G, Ono K, Orchard S, Prieto C, Razick S, Rigina O, Salwinski L, Simonovic M, Velankar S, Winter A, Wu G, Bader GD, Cesareni G, Donaldson IM, Eisenberg D, Kleywegt GJ, Overington J, Ricard-Blum S, Tyers M, Albrecht M, Hermjakob H
(2011) Nat Methods 8 : 528-9
56. MatrixDB, the extracellular matrix interaction database.
Chautard E, Fatoux-Ardore M, Ballut L, Thierry-Mieg N, Ricard-Blum S
(2011) Nucleic Acids Res 39 : D235-40
55. Surface characterization and efficiency of a matrix-free and flat carboxylated gold sensor chip for surface plasmon resonance (SPR).
Roussille L, Brotons G, Ballut L, Louarn G, Ausserre D, Ricard-Blum S
(2011) Anal Bioanal Chem 401 : 1601-17
54. Isolation, characterization and biological evaluation of jellyfish collagen for use in biomedical applications.
Addad S, Exposito JY, Faye C, Ricard-Blum S, Lethias C
(2011) Mar Drugs 9 : 967-83
53. Identification of binding partners interacting with the alpha 1-N-propeptide of type V collagen
Symoens S, Renard M, Bonod-Bidaud C, Syx D, Vaganay E, Malfait F, Ricard-Blum S, Kessler E, Van Laer L, Coucke P, Ruggiero F, De Paepe A
(2011) BIOCHEMICAL JOURNAL 433 : 371-381
52. A large decoy set of protein-protein complexes produced by flexible docking.
Launay G, Simonson T
(2011) J Comput Chem 32 : 106-20
51. Understanding the biology of aging with interaction networks.
Peysselon F, Ricard-Blum S
(2011) Maturitas 69 : 126-30
2010 [Top] 6
50. Interaction networks as a tool to investigate the mechanisms of aging.
Chautard E, Thierry-Mieg N, Ricard-Blum S
(2010) Biogerontology 11 : 463-73
49. The extended conformation of the 2.9-A crystal structure of the three-PASTA domain of a Ser/Thr kinase from the human pathogen Staphylococcus aureus.
Paracuellos P, Ballandras A, Robert X, Kahn R, Herve M, Mengin-Lecreulx D, Cozzone AJ, Duclos B, Gouet P
(2010) J Mol Biol 404 : 847-58
48. The Staphylococcus aureus autoinducer-2 synthase LuxS is regulated by Ser/Thr phosphorylation.
Cluzel ME, Zanella-Cleon I, Cozzone AJ, Futterer K, Duclos B, Molle V
(2010) J Bacteriol 192 : 6295-301
47. Phosphorylation of the virulence regulator SarA modulates its ability to bind DNA in Staphylococcus aureus.
Didier JP, Cozzone AJ, Duclos B
(2010) FEMS Microbiol Lett 306 : 30-6
46. Binding of procollagen C-proteinase enhancer-1 (PCPE-1) to heparin/heparan sulfate: properties and role in PCPE-1 interaction with cells.
Weiss T, Ricard-Blum S, Moschcovich L, Wineman E, Mesilaty S, Kessler E
(2010) J Biol Chem 285 : 33867-74
45. Transglutaminase-2: a new endostatin partner in the extracellular matrix of endothelial cells.
Faye C, Inforzato A, Bignon M, Hartmann DJ, Muller L, Ballut L, Olsen BR, Day AJ, Ricard-Blum S
(2010) Biochem J 427 : 467-75
2009 [Top] 8
44. Characterization of a serine/threonine kinase involved in virulence of Staphylococcus aureus.
Debarbouille M, Dramsi S, Dussurget O, Nahori MA, Vaganay E, Jouvion G, Cozzone A, Msadek T, Duclos B
(2009) J Bacteriol 191 : 4070-81
43. Interaction networks: from protein functions to drug discovery. A review.
Chautard E, Thierry-Mieg N, Ricard-Blum S
(2009) Pathol Biol (Paris) 57 : 324-33
42. MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions.
Chautard E, Ballut L, Thierry-Mieg N, Ricard-Blum S
(2009) Bioinformatics 25 : 690-1
41. The first draft of the endostatin interaction network.
Faye C, Chautard E, Olsen BR, Ricard-Blum S
(2009) J Biol Chem 284 : 22041-7
40. Crystallization and initial X-ray diffraction study of the three PASTA domains of the Ser/Thr kinase Stk1 from the human pathogen Staphylococcus aureus.
Paracuellos P, Ballandras A, Robert X, Cozzone AJ, Duclos B, Gouet P
(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65 : 1187-9
39. Molecular interplay between endostatin, integrins, and heparan sulfate.
Faye C, Moreau C, Chautard E, Jetne R, Fukai N, Ruggiero F, Humphries MJ, Olsen BR, Ricard-Blum S
(2009) J Biol Chem 284 : 22029-40
38. "Regenerative medicine: stem cells and extracellular matrix".
Ricard-Blum S
(2009) Pathol Biol (Paris) 57 : 281-281
37. Interaction of the coiled-coil domain with glycosaminoglycans protects angiopoietin-like 4 from proteolysis and regulates its antiangiogenic activity.
Chomel C, Cazes A, Faye C, Bignon M, Gomez E, Ardidie-Robouant C, Barret A, Ricard-Blum S, Muller L, Germain S, Monnot C
(2009) FASEB J 23 : 940-9
2008 [Top] 1
36. A modified His-tag vector for the production of recombinant protein kinases.
Lomas-Lopez R, Cozzone AJ, Duclos B
(2008) Anal Biochem 377 : 272-3
2007 [Top] 4
35. Insights into how CUB domains can exert specific functions while sharing a common fold: conserved and specific features of the CUB1 domain contribute to the molecular basis of procollagen C-proteinase enhancer-1 activity.
Blanc G, Font B, Eichenberger D, Moreau C, Ricard-Blum S, Hulmes DJ, Moali C
(2007) J Biol Chem 282 : 16924-33
34. The exchangeable apolipoprotein ApoC-I promotes membrane fusion of hepatitis C virus.
Dreux M, Boson B, Ricard-Blum S, Molle J, Lavillette D, Bartosch B, Pecheur EI, Cosset FL
(2007) J Biol Chem 282 : 32357-69
33. Several enzymes of the central metabolism are phosphorylated in Staphylococcus aureus.
Lomas-Lopez R, Paracuellos P, Riberty M, Cozzone AJ, Duclos B
(2007) FEMS Microbiol Lett 272 : 35-42
32. UDP-acetyl-mannosamine dehydrogenase is an endogenous protein substrate of Staphylococcus aureus protein-tyrosine kinase activity.
Soulat D, Grangeasse C, Vaganay E, Cozzone AJ, Duclos B
(2007) J Mol Microbiol Biotechnol 13 : 45-54
2006 [Top] 7
31. Structural requirements for heparin/heparan sulfate binding to type V collagen.
Ricard-Blum S, Beraud M, Raynal N, Farndale RW, Ruggiero F
(2006) J Biol Chem 281 : 25195-204
30. Impact of carbamylation on type I collagen conformational structure and its ability to activate human polymorphonuclear neutrophils.
Jaisson S, Lorimier S, Ricard-Blum S, Sockalingum GD, Delevallee-Forte C, Kegelaer G, Manfait M, Garnotel R, Gillery P
(2006) Chem Biol 13 : 149-59
29. Staphylococcus aureus operates protein-tyrosine phosphorylation through a specific mechanism.
Soulat D, Jault JM, Duclos B, Geourjon C, Cozzone AJ, Grangeasse C
(2006) J Biol Chem 281 : 14048-56
28. Characterization of osteoprotegerin binding to glycosaminoglycans by surface plasmon resonance: role in the interactions with receptor activator of nuclear factor kappaB ligand (RANKL) and RANK.
Theoleyre S, Kwan Tat S, Vusio P, Blanchard F, Gallagher J, Ricard-Blum S, Fortun Y, Padrines M, Redini F, Heymann D
(2006) Biochem Biophys Res Commun 347 : 460-7
27. Circulating fibrosis markers, eosinophil cationic protein and eosinophil protein X in patients with Wuchereria bancrofti infection: association with clinical status.
Esterre P, Plichart C, Huin-Blondey MO, Nguyen LN, Hartmann D, Guerret S, Reimert CM, Ricard-Blum S
(2006) Parasite 13 : 165-70
26. Dual polarization interferometry characterization of carbohydrate-protein interactions.
Ricard-Blum S, Peel LL, Ruggiero F, Freeman NJ
(2006) Anal Biochem 352 : 252-9
25. High density lipoprotein inhibits hepatitis C virus-neutralizing antibodies by stimulating cell entry via activation of the scavenger receptor BI.
Dreux M, Pietschmann T, Granier C, Voisset C, Ricard-Blum S, Mangeot PE, Keck Z, Foung S, Vu-Dac N, Dubuisson J, Bartenschlager R, Lavillette D, Cosset FL
(2006) J Biol Chem 281 : 18285-95
2005 [Top] 4
24. The collagen superfarmily
Ricard-Blum S, Ruggiero F, Van Der Rest M
(2005) COLLAGEN TOPICS IN CURRENT CHEMISTRY 247 : 35-84
23. The collagen superfamily: from the extracellular matrix to the cell membrane.
Ricard-Blum S, Ruggiero F
(2005) Pathol Biol (Paris) 53 : 430-42
22. [Collagens associated with basement membranes and their matricryptins].
Ricard-Blum S, Faye C
(2005) J Soc Biol 199 : 321-8
21. Structural characterization of the feline-immunodeficiency-virus envelope glycoprotein 36 ectodomain for the development of new antivirals.
Desmaris F, Lemaire D, Ricard-Blum S, Chatrenet B, Forest E
(2005) Biochem J 389 : 559-67
2004 [Top] 4
20. Protein phosphorylation on tyrosine in bacteria.
Cozzone AJ, Grangeasse C, Doublet P, Duclos B
(2004) Arch Microbiol 181 : 171-81
19. Structural basis of dynamic glycine receptor clustering by gephyrin.
Sola M, Bavro VN, Timmins J, Franz T, Ricard-Blum S, Schoehn G, Ruigrok RW, Paarmann I, Saiyed T, O'Sullivan GA, Schmitt B, Betz H, Weissenhorn W
(2004) EMBO J 23 : 2510-9
18. Characterization of endostatin binding to heparin and heparan sulfate by surface plasmon resonance and molecular modeling: role of divalent cations.
Ricard-Blum S, Feraud O, Lortat-Jacob H, Rencurosi A, Fukai N, Dkhissi F, Vittet D, Imberty A, Olsen BR, Van Der Rest M
(2004) J Biol Chem 279 : 2927-36
17. Autophosphorylation of the 16 kDa and 70 kDa antigens (Hsp 16.3 and Hsp 70) of Mycobacterium tuberculosis.
Preneta R, Papavinasasundaram KG, Cozzone AJ, Duclos B
(2004) Microbiology 150 : 2135-41
2002 [Top] 2
16. Isolation and characterization of a protein-tyrosine kinase and a phosphotyrosine-protein phosphatase from Klebsiella pneumoniae.
Preneta R, Jarraud S, Vincent C, Doublet P, Duclos B, Etienne J, Cozzone AJ
(2002) Comp Biochem Physiol B Biochem Mol Biol 131 : 103-12
15. Staphylococcus aureus contains two low-molecular-mass phosphotyrosine protein phosphatases.
Soulat D, Vaganay E, Duclos B, Genestier AL, Etienne J, Cozzone AJ
(2002) J Bacteriol 184 : 5194-9
2000 [Top] 1
14. Relationship between exopolysaccharide production and protein-tyrosine phosphorylation in gram-negative bacteria.
Vincent C, Duclos B, Grangeasse C, Vaganay E, Riberty M, Cozzone AJ, Doublet P
(2000) J Mol Biol 304 : 311-21
1999 [Top] 4
13. Alternative procedure for two-dimensional separation of phosphoamino acids.
Grangeasse C, Riberty M, Vaganay E, Duclos B
(1999) Biotechniques 27 : 62-4
12. On the binding of ATP to the autophosphorylating protein, Ptk, of the bacterium Acinetobacter johnsonii.
Doublet P, Vincent C, Grangeasse C, Cozzone AJ, Duclos B
(1999) FEBS Lett 445 : 137-43
11. Cells of Escherichia coli contain a protein-tyrosine kinase, Wzc, and a phosphotyrosine-protein phosphatase, Wzb.
Vincent C, Doublet P, Grangeasse C, Vaganay E, Cozzone AJ, Duclos B
(1999) J Bacteriol 181 : 3472-7
10. Biochemical properties of the protein tyrosine kinase of the bacterium Acinetobacter johnsonii.
Grangeasse C, Vincent C, Doublet P, Cozzone AJ, Duclos B
(1999) IUBMB Life 48 : 339-43
1998 [Top] 1
9. Functional characterization of the low-molecular-mass phosphotyrosine-protein phosphatase of Acinetobacter johnsonii.
Grangeasse C, Doublet P, Vincent C, Vaganay E, Riberty M, Duclos B, Cozzone AJ
(1998) J Mol Biol 278 : 339-47
1997 [Top] 3
8. Hyperphosphorylation of beta-catenin on serine-threonine residues and loss of cell-cell contacts induced by calyculin A and okadaic acid in human epidermal cells.
Serres M, Grangeasse C, Haftek M, Durocher Y, Duclos B, Schmitt D
(1997) Exp Cell Res 231 : 163-72
7. Characterization of a bacterial gene encoding an autophosphorylating protein tyrosine kinase.
Grangeasse C, Doublet P, Vaganay E, Vincent C, Deleage G, Duclos B, Cozzone AJ
(1997) Gene 204 : 259-65
6. Cyclic AMP stimulates the protein tyrosine kinase activity of Acinetobacter calcoaceticus
Grangeasse C, Vaganay E, Doublet P, Riberty M, Cozzone AJ, Duclos B
(1997) FEMS MICROBIOLOGY LETTERS 152 : 333-337
1996 [Top] 2
5. Pyrophosphate is a source of phosphoryl groups for Escherichia coli protein phosphorylation.
Duclos B, Vaganay E, Dadssi M, Cozzone AJ
(1996) FEMS Microbiol Lett 145 : 49-54
4. Autophosphorylation of a bacterial protein at tyrosine.
Duclos B, Grangeasse C, Vaganay E, Riberty M, Cozzone AJ
(1996) J Mol Biol 259 : 891-5
1991 [Top] 3
3. Primary structure of the intergenic region between aceK and iclR in the Escherichia coli chromosome.
Galinier A, Bleicher F, Negre D, Perriere G, Duclos B, Cozzone AJ, Cortay JC
(1991) Gene 97 : 149-50
2. Regulation of the acetate operon in Escherichia coli: purification and functional characterization of the IclR repressor.
Cortay JC, Negre D, Galinier A, Duclos B, Perriere G, Cozzone AJ
(1991) EMBO J 10 : 675-9
1. Chemical properties and separation of phosphoamino acids by thin-layer chromatography and/or electrophoresis.
Duclos B, Marcandier S, Cozzone AJ
(1991) Methods Enzymol 201 : 10-21