Accueil du site > Équipes > Bioinformatique : structures et interactions (R Lavery) > Publications
Publications
150. HBVdb: a knowledge database for Hepatitis B Virus.
Hayer J, Jadeau F, Deleage G, Kay A, Zoulim F, Combet C
(2013) Nucleic Acids Res 41 : D566-70
149. Localization of putative binding sites for cyclic guanosine monophosphate and the anti-cancer drug 5-fluoro-2[prime]-deoxyuridine-5[prime]-monophosphate on ABCC11 in silico models.
Honorat M, Terreux R, Falson P, Di Pietro A, Dumontet C, Payen L
(2013) BMC Struct Biol 13 : 7-7
148. Evolution of Bcl-2 homology motifs: homology versus homoplasy.
Aouacheria A, Rech De Laval V, Combet C, Hardwick JM
(2013) Trends Cell Biol 23 : 103-11
147. Calcineurin A vs NS5A-TP2/HDDC2: a case study of site-directed low-frequency random mutagenesis for dissecting target specificity of peptide aptamers.
Dibenedetto S, Cluet D, Stebe PN, Baumle V, Leault J, Terreux R, Bickle M, De Chassey B, Mikaelian I, Colas P, Spichty M, Zoli M, Rudkin BB
(2013) Mol Cell Proteomics :
146. Interhelical loops within the bHLH domain are determinant in maintaining TWIST1-DNA complexes.
Bouard C, Terreux R, Hope J, Chemelle JA, Puisieux A, Ansieau S, Payen L
(2013) J Biomol Struct Dyn :
2012 [Top] 12
145. Arbitrary protein-protein docking targets biologically relevant interfaces.
Martin J, Lavery R
(2012) BMC Biophys 5 : 7-7
144. Exploring polymorphisms in B-DNA helical conformations.
Dans PD, Perez A, Faustino I, Lavery R, Orozco M
(2012) Nucleic Acids Res 40 : 10668-78
143. Mutagenesis of the bovSERPINA3-3 demonstrates the requirement of aspartate-371 for intermolecular interaction and formation of dimers.
Blanchet X, Pere-Brissaud A, Duprat N, Pinault E, Delourme D, Ouali A, Combet C, Maftah A, Pelissier P, Bremaud L
(2012) Protein Sci 21 : 977-86
142. Towards a molecular view of transcriptional control.
Zakrzewska K, Lavery R
(2012) Curr Opin Struct Biol 22 : 160-7
141. Investigation of chalcones as selective inhibitors of the breast cancer resistance protein: critical role of methoxylation in both inhibition potency and cytotoxicity.
Valdameri G, Gauthier C, Terreux R, Kachadourian R, Day BJ, Winnischofer SM, Rocha ME, Frachet V, Ronot X, Di Pietro A, Boumendjel A
(2012) J Med Chem 55 : 3193-200
140. A Protein Solvation Model Based on Residue Burial
Ceres N, Pasi M, Lavery R
(2012) JOURNAL OF CHEMICAL THEORY AND COMPUTATION 8 : 2141-2144
139. An interactive 3D viewer of molecules compatible with the suite of ANTHEPROT programs.
Deleage G
(2012) Journal of Biophysical Chemistry 3 : 35-38
138. BYKdb: the Bacterial protein tYrosine Kinase database.
Jadeau F, Grangeasse C, Shi L, Mijakovic I, Deleage G, Combet C
(2012) Nucleic Acids Res 40 : D321-4
137. 6-halogenochromones bearing tryptamine: one-step access to potent and highly selective inhibitors of breast cancer resistance protein.
Valdameri G, Genoux-Bastide E, Gauthier C, Peres B, Terreux R, Winnischofer SM, Rocha ME, Di Pietro A, Boumendjel A
(2012) ChemMedChem 7 : 1177-80
136. Mutations that alter use of hepatitis C virus cell entry factors mediate escape from neutralizing antibodies.
Fofana I, Fafi-Kremer S, Carolla P, Fauvelle C, Zahid MN, Turek M, Heydmann L, Cury K, Hayer J, Combet C, Cosset FL, Pietschmann T, Hiet MS, Bartenschlager R, Habersetzer F, Doffoel M, Keck ZY, Foung SK, Zeisel MB, Stoll-Keller F, Baumert TF
(2012) Gastroenterology 143 : 223-233
135. Substituted chromones as highly potent nontoxic inhibitors, specific for the breast cancer resistance protein.
Valdameri G, Genoux-Bastide E, Peres B, Gauthier C, Guitton J, Terreux R, Winnischofer SM, Rocha ME, Boumendjel A, Di Pietro A
(2012) J Med Chem 55 : 966-70
134. Multistep drug intercalation: molecular dynamics and free energy studies of the binding of daunomycin to DNA.
Wilhelm M, Mukherjee A, Bouvier B, Zakrzewska K, Hynes JT, Lavery R
(2012) J Am Chem Soc 134 : 8588-96
2011 [Top] 8
133. Dissecting protein loops with a statistical scalpel suggests a functional implication of some structural motifs.
Regad L, Martin J, Camproux AC
(2011) BMC Bioinformatics 12 : 247-247
132. Targeting the multidrug ABCG2 transporter with flavonoidic inhibitors: in vitro optimization and in vivo validation.
Boumendjel A, Macalou S, Valdameri G, Pozza A, Gauthier C, Arnaud O, Nicolle E, Magnard S, Falson P, Terreux R, Carrupt PA, Payen L, Di Pietro A
(2011) Curr Med Chem 18 : 3387-401
131. Protein-DNA recognition triggered by a DNA conformational switch.
Bouvier B, Zakrzewska K, Lavery R
(2011) Angew Chem Int Ed Engl 50 : 6516-8
130. Multidrug resistance ABC transporter structure predictions by homology modeling approaches.
Honorat M, Falson P, Terreux R, Di Pietro A, Dumontet C, Payen L
(2011) Curr Drug Metab 12 : 268-77
129. CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures.
Blanchet C, Pasi M, Zakrzewska K, Lavery R
(2011) Nucleic Acids Res 39 : W68-73
128. [The directory of French biological resources centres/biobanks].
Jadeau F, Barthelaix A, Burgun A, Deleval C, Garcelon N, Gele P, Libersa C, Savonnet M, Tabone E, Combet C
(2011) Med Sci (Paris) 27 : 895-7
127. C(16)-methyl corticosteroids are far less allergenic than the non-methylated molecules.
Baeck M, Chemelle JA, Rasse C, Terreux R, Goossens A
(2011) Contact Dermatitis 64 : 305-12
126. Corticosteroid cross-reactivity: clinical and molecular modelling tools.
Baeck M, Chemelle JA, Goossens A, Nicolas JF, Terreux R
(2011) Allergy 66 : 1367-74
2010 [Top] 13
125. Bacterial tyrosine-kinases: structure-function analysis and therapeutic potential.
Grangeasse C, Terreux R, Nessler S
(2010) Biochim Biophys Acta 1804 : 628-34
124. Beauty Is in the Eye of the Beholder: Proteins Can Recognize Binding Sites of Homologous Proteins in More than One Way
Martin J,
(2010) PLOS COMPUTATIONAL BIOLOGY 6 : e1000821-e1000821
123. Optical Properties of Guanine Nanowires: Experimental and Theoretical Study
Changenet-Barret P, Emanuele E, Gustavsson T, Improta R, Kotlyar AB, Markovitsi D, Vaya I, Zakrzewska K, Zikich D
(2010) JOURNAL OF PHYSICAL CHEMISTRY C 114 : 14339-14346
122. A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA.
Lavery R, Zakrzewska K, Beveridge D, Bishop TC, Case DA, Cheatham T, Dixit S, Jayaram B, Lankas F, Laughton C, Maddocks JH, Michon A, Osman R, Orozco M, Perez A, Singh T, Spackova N, Sponer J
(2010) Nucleic Acids Res 38 : 299-313
121. Identification of structural and molecular determinants of the tyrosine-kinase Wzc and implications in capsular polysaccharide export.
Bechet E, Gruszczyk J, Terreux R, Gueguen-Chaignon V, Vigouroux A, Obadia B, Cozzone AJ, Nessler S, Grangeasse C
(2010) Mol Microbiol 77 : 1315-25
120. Mining protein loops using a structural alphabet and statistical exceptionality.
Regad L, Martin J, Nuel G, Camproux AC
(2010) BMC Bioinformatics 11 : 75-75
119. Potent and fully noncompetitive peptidomimetic inhibitor of multidrug resistance P-glycoprotein.
Arnaud O, Koubeissi A, Ettouati L, Terreux R, Alame G, Grenot C, Dumontet C, Di Pietro A, Paris J, Falson P
(2010) J Med Chem 53 : 6720-9
118. Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data
Nuel G, Regad L, Martin J, Camproux AC,
(2010) ALGORITHMS FOR MOLECULAR BIOLOGY 5 : 15-15
117. Classification of protein kinases on the basis of both kinase and non-kinase regions.
Martin J, Anamika K, Srinivasan N
(2010) PLoS One 5 : e12460-e12460
116. SM2PH-db: an interactive system for the integrated analysis of phenotypic consequences of missense mutations in proteins involved in human genetic diseases.
Friedrich A, Garnier N, Gagniere N, Nguyen H, Albou LP, Biancalana V, Bettler E, Deleage G, Lecompte O, Muller J, Moras D, Mandel JL, Toursel T, Moulinier L, Poch O
(2010) Hum Mutat 31 : 127-35
115. ViralORFeome: an integrated database to generate a versatile collection of viral ORFs.
Pellet J, Tafforeau L, Lucas-Hourani M, Navratil V, Meyniel L, Achaz G, Guironnet-Paquet A, Aublin-Gex A, Caignard G, Cassonnet P, Chaboud A, Chantier T, Deloire A, Demeret C, Le Breton M, Neveu G, Jacotot L, Vaglio P, Delmotte S, Gautier C, Combet C, Deleage G, Favre M, Tangy F, Jacob Y, Andre P, Lotteau V, Rabourdin-Combe C, Vidalain PO
(2010) Nucleic Acids Res 38 : D371-8
114. Exploring genomes for glycosyltransferases.
Hansen SF, Bettler E, Rinnan A, Engelsen SB, Breton C
(2010) Mol Biosyst 6 : 1773-81
113. Finite Markov Chain Embedding for the Exact Distribution of Patterns in a Set of Random Sequences
Martin J, Regad L, Camproux AC, Nuel G
(2010) ADVANCES IN DATA ANALYSIS - THEORY AND APPLICATIONS TO RELIABILITY AND INFERENCE, DATA MINING, BIOINFORMATICS, LIFETIME DATA, AND NEURAL NETWORKS : 171-180
2009 [Top] 16
112. Coarse-grain simulations of the R-SNARE fusion protein in its membrane environment detect long-lived conformational sub-states.
Durrieu MP, Bond PJ, Sansom MS, Lavery R, Baaden M
(2009) Chemphyschem 10 : 1548-52
111. Deforming DNA: from physics to biology.
Prevost C, Takahashi M, Lavery R
(2009) Chemphyschem 10 : 1399-404
110. Tyrosine dephosphorylation of the syndecan-1 PDZ binding domain regulates syntenin-1 recruitment.
Sulka B, Lortat-Jacob H, Terreux R, Letourneur F, Rousselle P
(2009) J Biol Chem 284 : 10659-71
109. The euHCVdb suite of in silico tools for investigating the structural impact of mutations in hepatitis C virus proteins.
Combet C, Bettler E, Terreux R, Garnier N, Deleage G
(2009) Infect Disord Drug Targets 9 : 272-8
108. Mutation in the melanocortin 1 receptor is associated with amber colour in the Norwegian Forest Cat.
Peterschmitt M, Grain F, Arnaud B, Deleage G, Lambert V
(2009) Anim Genet 40 : 547-52
107. A free energy pathway for the interaction of the SRY protein with its binding site on DNA from atomistic simulations.
Bouvier B, Lavery R
(2009) J Am Chem Soc 131 : 9864-5
106. PDB_REDO: automated re-refinement of X-ray structure models in the PDB.
Joosten RP, Salzemann J, Bloch V, Stockinger H, Berglund AC, Blanchet C, Bongcam-Rudloff E, Combet C, Da Costa AL, Deleage G, Diarena M, Fabbretti R, Fettahi G, Flegel V, Gisel A, Kasam V, Kervinen T, Korpelainen E, Mattila K, Pagni M, Reichstadt M, Breton V, Tickle IJ, Vriend G
(2009) J Appl Crystallogr 42 : 376-384
105. Conformational analysis of nucleic acids revisited: Curves+.
Lavery R, Moakher M, Maddocks JH, Petkeviciute D, Zakrzewska K
(2009) Nucleic Acids Res 37 : 5917-29
104. Modeling the Mechanical Response of Proteins to Anisotropic Deformation
Sacquin-Mora S, Lavery R
(2009) CHEMPHYSCHEM 10 : 115-118
103. Dynamic properties of a psychrophilic alpha-amylase in comparison with a mesophilic homologue.
Pasi M, Riccardi L, Fantucci P, De Gioia L, Papaleo E
(2009) J Phys Chem B 113 : 13585-95
102. Modeling the mechanical response of proteins to anisotropic deformation.
Sacquin-Mora S, Lavery R
(2009) Chemphyschem 10 : 115-8
101. Local and global effects of strong DNA bending induced during molecular dynamics simulations.
Curuksu J, Zacharias M, Lavery R, Zakrzewska K
(2009) Nucleic Acids Res 37 : 3766-73
100. Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling.
Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A
(2009) PLoS Comput Biol 5 : e1000267-e1000267
99. Combination of several bioinformatics approaches for the identification of new putative glycosyltransferases in Arabidopsis.
Hansen SF, Bettler E, Wimmerova M, Imberty A, Lerouxel O, Breton C
(2009) J Proteome Res 8 : 743-53
98. Protein-DNA binding specificity: a grid-enabled computational approach applied to single and multiple protein assemblies.
Zakrzewska K, Bouvier B, Michon A, Blanchet C, Lavery R
(2009) Phys Chem Chem Phys 11 : 10712-21
97. Delayed hypersensitivity to corticosteroids in a series of 315 patients: clinical data and patch test results.
Baeck M, Chemelle JA, Terreux R, Drieghe J, Goossens A
(2009) Contact Dermatitis 61 : 163-75
2008 [Top] 14
96. Identification of the idiosyncratic bacterial protein tyrosine kinase (BY-kinase) family signature.
Jadeau F, Bechet E, Cozzone AJ, Deleage G, Grangeasse C, Combet C
(2008) Bioinformatics 24 : 2427-30
95. Identification of protein interaction partners and protein-protein interaction sites.
Sacquin-Mora S, Carbone A, Lavery R
(2008) J Mol Biol 382 : 1276-89
94. MSX-3D: a tool to validate 3D protein models using mass spectrometry.
Heymann M, Paramelle D, Subra G, Forest E, Martinez J, Geourjon C, Deleage G
(2008) Bioinformatics 24 : 2782-3
93. On the molecular mechanism of drug intercalation into DNA: a simulation study of the intercalation pathway, free energy, and DNA structural changes.
Mukherjee A, Lavery R, Bagchi B, Hynes JT
(2008) J Am Chem Soc 130 : 9747-55
92. Structural deformation upon protein-protein interaction: a structural alphabet approach.
Martin J, Regad L, Lecornet H, Camproux AC
(2008) BMC Struct Biol 8 : 12-12
91. Atomistic Modeling of the Membrane-Embedded Synaptic Fusion Complex: a Grand Challenge Project on the DEISA HPC Infrastructure
Krieger E, Leger L, Durrieu MP, Taib N, Bond P, Laguerre M, Lavery R, Sansom MSP, Baaden M
(2008) PARALLEL COMPUTING: ARCHITECTURES, ALGORITHNMS AND APPLICATIONS Book Series: Advances in Parallel Computing 15 : 729-736
90. Interactions between neuronal fusion proteins explored by molecular dynamics.
Durrieu MP, Lavery R, Baaden M
(2008) Biophys J 94 : 3436-46
89. In silico local structure approach: a case study on outer membrane proteins.
Martin J, De Brevern AG, Camproux AC
(2008) Proteins 71 : 92-109
88. Transcriptional slippage prompts recoding in alternate reading frames in the hepatitis C virus (HCV) core sequence from strain HCV-1.
Ratinier M, Boulant S, Combet C, Targett-Adams P, McLauchlan J, Lavergne JP
(2008) J Gen Virol 89 : 1569-78
87. Magnitude and direction of DNA bending induced by screw-axis orientation: influence of sequence, mismatches and abasic sites.
Curuksu J, Zakrzewska K, Zacharias M
(2008) Nucleic Acids Res 36 : 2268-83
86. Protein-DNA recognition: Breaking the combinatorial barrier
Deremble C, Lavery R, Zakrzewska K
(2008) COMPUTER PHYSICS COMMUNICATIONS 179 : 112-119
85. Theoretical description of chromosome architecture after multiple back-crossing.
Rodolphe F, Martin J, Della-Chiesa E
(2008) Theor Popul Biol 73 : 289-99
84. Comparative kinomics of human and chimpanzee reveal unique kinship and functional diversity generated by new domain combinations
Anamika K, Martin J, Srinivasan N
(2008) BMC GENOMICS 9 : 625-625
83. Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes.
Martin J, Regad L, Etchebest C, Camproux AC
(2008) Proteins 73 : 672-89
2007 [Top] 7
82. Probing the flexibility of the bacterial reaction center: the wild-type protein is more rigid than two site-specific mutants.
Sacquin-Mora S, Sebban P, Derrien V, Frick B, Lavery R, Alba-Simionesco C
(2007) Biochemistry 46 : 14960-8
81. Blast sampling for structural and functional analyses.
Friedrich A, Ripp R, Garnier N, Bettler E, Deleage G, Poch O, Moulinier L
(2007) BMC Bioinformatics 8 : 62-62
80. Locating the active sites of enzymes using mechanical properties.
Sacquin-Mora S, Laforet E, Lavery R
(2007) Proteins 67 : 350-9
79. euHCVdb: the European hepatitis C virus database.
Combet C, Garnier N, Charavay C, Grando D, Crisan D, Lopez J, Dehne-Garcia A, Geourjon C, Bettler E, Hulo C, Le Mercier P, Bartenschlager R, Diepolder H, Moradpour D, Pawlotsky JM, Rice CM, Trepo C, Penin F, Deleage G
(2007) Nucleic Acids Res 35 : D363-6
78. Protein mechanics: a route from structure to function.
Lavery R, Sacquin-Mora S
(2007) J Biosci 32 : 891-8
77. Theory and simulation
Lavery R , Sharp KA
(2007) CURRENT OPINION IN STRUCTURAL BIOLOGY 17 : 147-148
76. Conserved determinants for membrane association of nonstructural protein 5A from hepatitis C virus and related viruses.
Brass V, Pal Z, Sapay N, Deleage G, Blum HE, Penin F, Moradpour D
(2007) J Virol 81 : 2745-57
2006 [Top] 13
75. Grid deployment of legacy bioinformatics applications with transparent data access
Blanchet C , Mollon R , Thain D , Deleage G
(2006) 2006 7th IEEE/ACM International Conference on Grid Computing : 120-127
74. Insights into early extracellular matrix evolution: spongin short chain collagen-related proteins are homologous to basement membrane type IV collagens and form a novel family widely distributed in invertebrates.
Aouacheria A, Geourjon C, Aghajari N, Navratil V, Deleage G, Lethias C, Exposito JY
(2006) Mol Biol Evol 23 : 2288-302
73. MAGOS: multiple alignment and modelling server.
Garnier N, Friedrich A, Bolze R, Bettler E, Moulinier L, Geourjon C, Thompson JD, Deleage G, Poch O
(2006) Bioinformatics 22 : 2164-5
72. Secured distributed service to manage biological data on EGEE grid.
Blanchet C, Mollon R, Deleage G
(2006) Stud Health Technol Inform 120 : 142-52
71. GPS@ bioinformatics portal: from network to EGEE grid.
Blanchet C, Lefort V, Combet C, Deleage G
(2006) Stud Health Technol Inform 120 : 187-93
70. Building an encrypted file system on the EGEE grid: Application to protein sequence analysis
Blanchet C, Mollon R, Deleage G
(2006) First International Conference on Availability, Reliability and Security, Proceedings : 965-971
69. Web services interface to run protein sequence tools on grid, testcase of protein sequence alignment
Blanchet C , Combet C , Daric V , Deleage G
(2006) Biological and Medical Data Analysis 4345 : 240-249
68. A comprehensive system for consistent numbering of HCV sequences, proteins and epitopes.
Kuiken C, Combet C, Bukh J, Shin-I T, Deleage G, Mizokami M, Richardson R, Sablon E, Yusim K, Pawlotsky JM, Simmonds P,
(2006) Hepatology 44 : 1355-61
67. Hepatitis C databases, principles and utility to researchers.
Kuiken C, Mizokami M, Deleage G, Yusim K, Penin F, Shin-I T, Charavay C, Tao N, Crisan D, Grando D, Dalwani A, Geourjon C, Agrawal A, Combet C
(2006) Hepatology 43 : 1157-65
66. Interactions study between the copper II ion and constitutive elements of chitosan structure by DFT calculation.
Terreux R, Domard M, Viton C, Domard A
(2006) Biomacromolecules 7 : 31-7
65. NMR structure and molecular dynamics of the in-plane membrane anchor of nonstructural protein 5A from bovine viral diarrhea virus.
Sapay N, Montserret R, Chipot C, Brass V, Moradpour D, Deleage G, Penin F
(2006) Biochemistry 45 : 2221-33
64. Prediction of amphipathic in-plane membrane anchors in monotopic proteins using a SVM classifier.
Sapay N, Guermeur Y, Deleage G
(2006) BMC Bioinformatics 7 : 255-255
63. Characterization of prostate-specific antigen binding peptides selected by phage display technology.
Ferrieu-Weisbuch C, Michel S, Collomb-Clerc E, Pothion C, Deleage G, Jolivet-Reynaud C
(2006) J Mol Recognit 19 : 10-20
2005 [Top] 6
62. Selective recognition of enzymatically active prostate-specific antigen (PSA) by anti-PSA monoclonal antibodies.
Michel S, Collomb-Clerc E, Geourjon C, Charrier JP, Passagot J, Courty Y, Deleage G, Jolivet-Reynaud C
(2005) J Mol Recognit 18 : 225-35
61. GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts.
Aubourg S, Brunaud V, Bruyere C, Cock M, Cooke R, Cottet A, Couloux A, Dehais P, Deleage G, Duclert A, Echeverria M, Eschbach A, Falconet D, Filippi G, Gaspin C, Geourjon C, Grienenberger JM, Houlne G, Jamet E, Lechauve F, Leleu O, Leroy P, Mache R, Meyer C, Nedjari H, Negrutiu I, Orsini V, Peyretaillade E, Pommier C, Raes J, Risler JL, Riviere S, Rombauts S, Rouze P, Schneider M, Schwob P, Small I, Soumayet-Kampetenga G, Stankovski D, Toffano C, Tognolli M, Caboche M, Lecharny A
(2005) Nucleic Acids Res 33 : D641-6
60. Water-protein hydrogen exchange in the micro-crystalline protein crh as observed by solid state NMR spectroscopy.
Bockmann A, Juy M, Bettler E, Emsley L, Galinier A, Penin F, Lesage A
(2005) J Biomol NMR 32 : 195-207
59. Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes.
Simmonds P, Bukh J, Combet C, Deleage G, Enomoto N, Feinstone S, Halfon P, Inchauspe G, Kuiken C, Maertens G, Mizokami M, Murphy DG, Okamoto H, Pawlotsky JM, Penin F, Sablon E, Shin-I T, Stuyver LJ, Thiel HJ, Viazov S, Weiner AJ, Widell A
(2005) Hepatology 42 : 962-73
58. The SuMo server: 3D search for protein functional sites.
Jambon M, Andrieu O, Combet C, Deleage G, Delfaud F, Geourjon C
(2005) Bioinformatics 21 : 3929-30
57. The nuclear receptor ligand-binding domain: a family-based structure analysis.
Folkertsma S, Van Noort PI, Brandt RF, Bettler E, Vriend G, De Vlieg J
(2005) Curr Med Chem 12 : 1001-16
2004 [Top] 5
56. HCVDB: hepatitis C virus sequences database.
Combet C, Penin F, Geourjon C, Deleage G
(2004) Appl Bioinformatics 3 : 237-40
55. A family-based approach reveals the function of residues in the nuclear receptor ligand-binding domain.
Folkertsma S, Van Noort P, Van Durme J, Joosten HJ, Bettler E, Fleuren W, Oliveira L, Horn F, De Vlieg J, Vriend G
(2004) J Mol Biol 341 : 321-35
54. Characterization of mimotopes mimicking an immunodominant conformational epitope on the hepatitis C virus NS3 helicase.
Jolivet-Reynaud C, Adida A, Michel S, Deleage G, Paranhos-Baccala G, Gonin V, Battail-Poirot N, Lacoux X, Rolland D
(2004) J Med Virol 72 : 385-95
53. Identification of antigenic regions of duck hepatitis B virus core protein with antibodies elicited by DNA immunization and chronic infection.
Thermet A, Robaczewska M, Rollier C, Hantz O, Trepo C, Deleage G, Cova L
(2004) J Virol 78 : 1945-53
52. Grid as a bioinformatic tool
Jacq N, Blanchet C, Combet C, Cornillot E, Duret L, Kurata K, Nakamura H, Silvestre T, Breton V
(2004) PARALLEL COMPUTING 30 : 1093-1107
2003 [Top] 11
51. Combining fold recognition and exploratory data analysis for searching for glycosyltransferases in the genome of Mycobacterium tuberculosis.
Wimmerova M, Engelsen SB, Bettler E, Breton C, Imberty A
(2003) Biochimie 85 : 691-700
50. Conservation of amino acids into multiple alignments involved in pairwise interactions in three-dimensional protein structures.
Errami M, Geourjon C, Deleage G
(2003) J Bioinform Comput Biol 1 : 505-520
49. Integrated databanks access and sequence/structure analysis services at the PBIL.
Perriere G, Combet C, Penel S, Blanchet C, Thioulouse J, Geourjon C, Grassot J, Charavay C, Gouy M, Duret L, Deleage G
(2003) Nucleic Acids Res 31 : 3393-9
48. GPCRDB information system for G protein-coupled receptors.
Horn F, Bettler E, Oliveira L, Campagne F, Cohen FE, Vriend G
(2003) Nucleic Acids Res 31 : 294-7
47. Low resolution structure determination shows procollagen C-proteinase enhancer to be an elongated multidomain glycoprotein.
Bernocco S, Steiglitz BM, Svergun DI, Petoukhov MV, Ruggiero F, Ricard-Blum S, Ebel C, Geourjon C, Deleage G, Font B, Eichenberger D, Greenspan DS, Hulmes DJ
(2003) J Biol Chem 278 : 7199-205
46. A new bioinformatic approach to detect common 3D sites in protein structures.
Jambon M, Imberty A, Deleage G, Geourjon C
(2003) Proteins 52 : 137-45
45. NRMD: Nuclear Receptor Mutation Database.
Van Durme JJ, Bettler E, Folkertsma S, Horn F, Vriend G
(2003) Nucleic Acids Res 31 : 331-3
44. Detection of unrelated proteins in sequences multiple alignments by using predicted secondary structures.
Errami M, Geourjon C, Deleage G
(2003) Bioinformatics 19 : 506-12
43. NRSAS: Nuclear Receptor Structure Analysis Servers.
Bettler E, Krause R, Horn F, Vriend G
(2003) Nucleic Acids Res 31 : 3400-3
42. Batch mode generation of residue-based diagrams of proteins.
Campagne F, Bettler E, Vriend G, Weinstein H
(2003) Bioinformatics 19 : 1854-5
41. Production of recombinant xenotransplantation antigen in Escherichia coli.
Bettler E, Imberty A, Priem B, Chazalet V, Heyraud A, Joziasse DH, Geremia RA
(2003) Biochem Biophys Res Commun 302 : 620-4
2002 [Top] 3
40. Evidence for crucial electrostatic interactions between Bcl-2 homology domains BH3 and BH4 in the anti-apoptotic Nr-13 protein.
Lalle P, Aouacheria A, Dumont-Miscopein A, Jambon M, Venet S, Bobichon H, Colas P, Deleage G, Geourjon C, Gillet G
(2002) Biochem J 368 : 213-21
39. Geno3D: automatic comparative molecular modelling of protein.
Combet C, Jambon M, Deleage G, Geourjon C
(2002) Bioinformatics 18 : 213-4
38. HCVDB: Database of hepatitis-C virus sequences and analytical bioinformation tools
Combet C, Penin F, Geourjon C, Deleage G
(2002) M S-MEDECINE SCIENCES 18 : 639-639
2001 [Top] 6
37. Identification of related proteins with weak sequence identity using secondary structure information.
Geourjon C, Combet C, Blanchet C, Deleage G
(2001) Protein Sci 10 : 788-97
36. A common mechanism for ATP hydrolysis in ABC transporter and helicase superfamilies.
Geourjon C, Orelle C, Steinfels E, Blanchet C, Deleage G, Di Pietro A, Jault JM
(2001) Trends Biochem Sci 26 : 539-44
35. Analysis of prostate specific antigen and alpha1-antichymotrypsin interaction using antipeptide monoclonal antibodies.
Michel S, Charrier JP, Deleage G, Battail-Poirot N, Jolivet M, Jolivet-Reynaud C
(2001) J Urol 165 : 301-6
34. ANTHEPROT: an integrated protein sequence analysis software with client/server capabilities.
Deleage G, Combet C, Blanchet C, Geourjon C
(2001) Comput Biol Med 31 : 259-67
33. Conservation of the conformation and positive charges of hepatitis C virus E2 envelope glycoprotein hypervariable region 1 points to a role in cell attachment.
Penin F, Combet C, Germanidis G, Frainais PO, Deleage G, Pawlotsky JM
(2001) J Virol 75 : 5703-10
32. Involvement of the C-terminal end of the prostrate-specific antigen in a conformational epitope: characterization by proteolytic degradation of monoclonal antibody-bound antigen and mass spectrometry.
Michel S, Forest E, Petillot Y, Deleage G, Heuze-Vourc'h N, Courty Y, Lascoux D, Jolivet M, Jolivet-Reynaud C
(2001) J Mol Recognit 14 : 406-13
2000 [Top] 5
31. MPSA: integrated system for multiple protein sequence analysis with client/server capabilities.
Blanchet C, Combet C, Geourjon C, Deleage G
(2000) Bioinformatics 16 : 286-7
30. NPS@: network protein sequence analysis.
Combet C, Blanchet C, Geourjon C, Deleage G
(2000) Trends Biochem Sci 25 : 147-50
29. Evidence for distinct complement regulatory and measles virus binding sites on CD46 SCR2.
Christiansen D, Deleage G, Gerlier D
(2000) Eur J Immunol 30 : 3457-62
28. AF15q14, a novel partner gene fused to the MLL gene in an acute myeloid leukaemia with a t(11;15)(q23;q14).
Hayette S, Tigaud I, Vanier A, Martel S, Corbo L, Charrin C, Beillard E, Deleage G, Magaud JP, Rimokh R
(2000) Oncogene 19 : 4446-50
27. 3-D proteins
Deleage G, Geourjon C
(2000) BIOFUTUR 2000 : 66-71
1999 [Top] 5
26. Structural analysis of the heparin-binding site of the NC1 domain of collagen XIV by CD and NMR.
Montserret R, Aubert-Foucher E, McLeish MJ, Hill JM, Ficheux D, Jaquinod M, Van Der Rest M, Deleage G, Penin F
(1999) Biochemistry 38 : 6479-88
25. Genetic capsid modifications allow efficient re-targeting of adeno-associated virus type 2.
Girod A, Ried M, Wobus C, Lahm H, Leike K, Kleinschmidt J, Deleage G, Hallek M
(1999) Nat Med 5 : 1438-1438
24. Anti-free prostate-specific antigen monoclonal antibody epitopes defined by mimotopes and molecular modeling.
Michel S, Deleage G, Charrier JP, Passagot J, Battail-Poirot N, Sibai G, Jolivet M, Jolivet-Reynaud C
(1999) Clin Chem 45 : 638-50
23. Improved performance in protein secondary structure prediction by inhomogeneous score combination.
Guermeur Y, Geourjon C, Gallinari P, Deleage G
(1999) Bioinformatics 15 : 413-21
22. Genetic capsid modifications allow efficient re-targeting of adeno-associated virus type 2.
Girod A, Ried M, Wobus C, Lahm H, Leike K, Kleinschmidt J, Deleage G, Hallek M
(1999) Nat Med 5 : 1052-6
1998 [Top] 2
21. Secondary structure of P-glycoprotein investigated by circular dichroism and amino acid sequence analysis.
Dong M, Ladaviere L, Penin F, Deleage G, Baggetto LG
(1998) Biochim Biophys Acta 1371 : 317-34
20. Identification and characterization of a heparin binding site within the NC1 domain of chicken collagen XIV.
Giry-Lozinguez C, Aubert-Foucher E, Penin F, Deleage G, Dublet B, Van Der Rest M
(1998) Matrix Biol 17 : 145-9
1997 [Top] 4
19. Three-dimensional structure of the DNA-binding domain of the fructose repressor from Escherichia coli by 1H and 15N NMR.
Penin F, Geourjon C, Montserret R, Bockmann A, Lesage A, Yang YS, Bonod-Bidaud C, Cortay JC, Negre D, Cozzone AJ, Deleage G
(1997) J Mol Biol 270 : 496-510
18. Characterization of a bacterial gene encoding an autophosphorylating protein tyrosine kinase.
Grangeasse C, Doublet P, Vaganay E, Vincent C, Deleage G, Duclos B, Cozzone AJ
(1997) Gene 204 : 259-65
17. Structure and organization of the Bombyx mori sericin 1 gene and of the sericins 1 deduced from the sequence of the Ser 1B cDNA.
Garel A, Deleage G, Prudhomme JC
(1997) Insect Biochem Mol Biol 27 : 469-77
16. Protein structure prediction. Implications for the biologist.
Deleage G, Blanchet C, Geourjon C
(1997) Biochimie 79 : 681-6
1996 [Top] 3
15. Definition of a consensus DNA-binding site for the Escherichia coli pleiotropic regulatory protein, FruR.
Negre D, Bonod-Bidaud C, Geourjon C, Deleage G, Cozzone AJ, Cortay JC
(1996) Mol Microbiol 21 : 257-66
14. Recombinant N-terminal nucleotide-binding domain from mouse P-glycoprotein. Overexpression, purification, and role of cysteine 430.
Dayan G, Baubichon-Cortay H, Jault JM, Cortay JC, Deleage G, Di Pietro A
(1996) J Biol Chem 271 : 11652-8
13. Isolation and characterization of Urbain, a 20-hydroxyecdysone-inducible gene expressed during morphogenesis of Bombyx mori wing imaginal discs
Besson MT, Chareyre P, Deleage G, Demont J, Quennedey B, Courrent A, Fourche J, Bosquet G
(1996) ROUXS ARCHIVES OF DEVELOPMENTAL BIOLOGY 205 : 333-343
1995 [Top] 5
12. SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments.
Geourjon C, Deleage G
(1995) Comput Appl Biosci 11 : 681-4
11. ANTHEPROT - A SOFTWARE TO DISPLAY AND ANALYZE 3D NMR STRUCTURES
Geourjon C, Deleage G
(1995) JOURNAL OF TRACE AND MICROPROBE TECHNIQUES 13 : 337-338
10. Characterization of two genes coding for a similar four-cysteine motif of the amino-terminal propeptide of a sea urchin fibrillar collagen.
Exposito JY, Boute N, Deleage G, Garrone R
(1995) Eur J Biochem 234 : 59-65
9. ANTHEPROT 2.0: a three-dimensional module fully coupled with protein sequence analysis methods.
Geourjon C, Deleage G
(1995) J Mol Graph 13 : 209-212
8. Dimerization kinetics of HIV-1 and HIV-2 reverse transcriptase: a two step process.
Divita G, Rittinger K, Geourjon C, Deleage G, Goody RS
(1995) J Mol Biol 245 : 508-21
1994 [Top] 4
7. Common topology within a non-collagenous domain of several different collagen types.
Moradi-Ameli M, Deleage G, Geourjon C, Van Der Rest M
(1994) Matrix Biol 14 : 233-9
6. Modifications in the binding domain of avian retrovirus envelope protein to redirect the host range of retroviral vectors.
Valsesia-Wittmann S, Drynda A, Deleage G, Aumailley M, Heard JM, Danos O, Verdier G, Cosset FL
(1994) J Virol 68 : 4609-19
5. SOPM: a self-optimized method for protein secondary structure prediction.
Geourjon C, Deleage G
(1994) Protein Eng 7 : 157-64
4. Cloning and sequence analysis of a polygalacturonase-encoding gene from the phytopathogenic fungus Sclerotinia sclerotiorum.
Reymond P, Deleage G, Rascle C, Fevre M
(1994) Gene 146 : 233-7
1993 [Top] 3
3. An interactive graphic program for calculating the secondary structure content of proteins from circular dichroism spectrum.
Deleage G, Geourjon C
(1993) Comput Appl Biosci 9 : 197-9
2. Interactive and graphic coupling between multiple alignments, secondary structure predictions and motif/pattern scanning into proteins.
Geourjon C, Deleage G
(1993) Comput Appl Biosci 9 : 87-91
1. FVT-1, a novel human transcription unit affected by variant translocation t(2;18)(p11;q21) of follicular lymphoma.
Rimokh R, Gadoux M, Bertheas MF, Berger F, Garoscio M, Deleage G, Germain D, Magaud JP
(1993) Blood 81 : 136-42